Transcript: ENST00000296443.9 TREX1-002

Description

three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:12269]

Gene Synonyms

AGS1, CRV, DRN3, HERNS

Location

Chromosome 3: 48,506,445-48,509,044 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 1758 variant alleles and maps to 556 oligo probes.

Gene

This transcript is a product of gene ENSG00000213689.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000422277.2	TREX1-201	1813	369aa	ENSP00000390478.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43086	C9J052 Q5TZT0 Q9NSU2	NM_016381.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000296443.9	TREX1-002	1877	314aa	ENSP00000296443.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2769	C9J052 Q5TZT0 Q9NSU2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436480.2	TREX1-202	1493	314aa	ENSP00000392569.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2769	C9J052 Q5TZT0 Q9NSU2	NM_033629.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444177.1	TREX1-004	1200	304aa	ENSP00000415972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59451	C9J052 Q5TZT0 Q9NSU2	NM_007248.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433541.1	TREX1-003	1105	175aa	ENSP00000412404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J052	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456089.1	TREX1-005	629	175aa	ENSP00000411331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J052	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492235.1	TREX1-006	696	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000395677.1	TREX1-001	2197	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 1,877 bps, Translation length: 314 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NSU2

CCDS

This transcript is a member of the Human CCDS set: CCDS2769

Version

ENST00000296443.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000344699 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000296443.9 TREX1-002

Summary