Transcript: ENST00000292377.2 GPC2-001

Description

glypican 2 [Source:HGNC Symbol;Acc:4450]

Gene Synonyms

DKFZp547M109, FLJ38962, cerebroglycan

Location

Chromosome 7: 99,767,229-99,774,990 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 12 domains and features, is associated with 4523 variant alleles and maps to 441 oligo probes.

Gene

This transcript is a product of gene ENSG00000213420.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000292377.2	GPC2-001	2532	579aa	ENSP00000292377.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5689	Q8N158	NM_152742.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471050.1	GPC2-003	1652	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480087.1	GPC2-005	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482569.1	GPC2-009	473	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471717.1	GPC2-002	2129	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490629.1	GPC2-007	798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486702.1	GPC2-008	787	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,532 bps, Translation length: 579 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N158

CCDS

This transcript is a member of the Human CCDS set: CCDS5689

Version

ENST00000292377.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000337556 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000292377.2 GPC2-001

Summary