Transcript: ENST00000581166.1 SUPT4H1-003

Description

suppressor of Ty 4 homolog 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:11467]

Gene Synonyms

SPT4, SPT4H, SUPT4H

Location

Chromosome 17: 56,422,539-56,429,528 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 3212 variant alleles and maps to 354 oligo probes.

Gene

This transcript is a product of gene ENSG00000213246.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225504.3	SUPT4H1-001	1489	117aa	ENSP00000225504.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11606	D3DTZ5 J3QR04 P63272	NM_003168.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577396.1	SUPT4H1-002	1643	76aa	ENSP00000462100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DTZ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581540.1	SUPT4H1-005	668	108aa	ENSP00000464618.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DTZ5 J3QSB9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580947.1	SUPT4H1-006	574	117aa	ENSP00000462670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11606	D3DTZ5 J3QR04 P63272	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581166.1	SUPT4H1-003	1398	59aa	ENSP00000463979.1	Nonsense mediated decay		J3QR04	-	-
ENST00000579289.1	SUPT4H1-004	318	42aa	ENSP00000462602.1	Nonsense mediated decay		J3KSQ6	-	-
ENST00000581204.1	SUPT4H1-007	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,398 bps, Translation length: 59 residues

Version

ENST00000581166.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000443999 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000581166.1 SUPT4H1-003

Summary