Transcript: ENST00000225504.3 SUPT4H1-001

Description

suppressor of Ty 4 homolog 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:11467]

Gene Synonyms

SPT4, SPT4H, SUPT4H

Location

Chromosome 17: 56,422,539-56,429,563 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 3257 variant alleles and maps to 390 oligo probes.

Gene

This transcript is a product of gene ENSG00000213246.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225504.3	SUPT4H1-001	1489	117aa	ENSP00000225504.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11606	D3DTZ5 J3QR04 P63272	NM_003168.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577396.1	SUPT4H1-002	1643	76aa	ENSP00000462100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DTZ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581540.1	SUPT4H1-005	668	108aa	ENSP00000464618.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DTZ5 J3QSB9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580947.1	SUPT4H1-006	574	117aa	ENSP00000462670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11606	D3DTZ5 J3QR04 P63272	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581166.1	SUPT4H1-003	1398	59aa	ENSP00000463979.1	Nonsense mediated decay		J3QR04	-	-
ENST00000579289.1	SUPT4H1-004	318	42aa	ENSP00000462602.1	Nonsense mediated decay		J3KSQ6	-	-
ENST00000581204.1	SUPT4H1-007	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,489 bps, Translation length: 117 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P63272

CCDS

This transcript is a member of the Human CCDS set: CCDS11606

Version

ENST00000225504.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000444000 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000225504.3 SUPT4H1-001

Summary