Transcript: ENST00000380966.4 LCMT1-011

Description

leucine carboxyl methyltransferase 1 [Source:HGNC Symbol;Acc:17557]

Gene Synonyms

CGI-68, LCMT, PPMT1

Location

Chromosome 16: 25,123,056-25,189,344 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 9 domains and features, is associated with 29095 variant alleles and maps to 328 oligo probes.

Gene

This transcript is a product of gene ENSG00000205629.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399069.3	LCMT1-001	1368	334aa	ENSP00000382021.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45445	I3L2Q8 Q9UIC8	NM_016309.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380966.4	LCMT1-011	989	279aa	ENSP00000370353.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45446	I3L2Q8 Q9UIC8	NM_001032391.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570981.1	LCMT1-004	612	119aa	ENSP00000459851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2Q8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572761.1	LCMT1-007	555	93aa	ENSP00000459604.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000575396.1	LCMT1-009	449	138aa	ENSP00000461754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000380962.5	LCMT1-003	1529	101aa	ENSP00000370349.5	Nonsense mediated decay		H7BYF0	-	-
ENST00000564011.1	LCMT1-002	1168	111aa	ENSP00000457741.1	Nonsense mediated decay		H3BUP7	-	-
ENST00000576625.1	LCMT1-010	640	158aa	ENSP00000461100.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572869.1	LCMT1-012	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577157.1	LCMT1-006	522	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000573435.1	LCMT1-013	196	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574450.1	LCMT1-008	517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576382.1	LCMT1-005	260	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 989 bps, Translation length: 279 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UIC8

CCDS

This transcript is a member of the Human CCDS set: CCDS45446

Version

ENST00000380966.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000436741 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000380966.4 LCMT1-011

Summary