Transcript: ENST00000543880.2 IZUMO3-001

Description

IZUMO family member 3 [Source:HGNC Symbol;Acc:31421]

Gene Synonyms

C9orf134, bA20A20.1

Location

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 2120 variant alleles and maps to 308 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543880.2	IZUMO3-001	1229	239aa	ENSP00000438895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VZ72	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000604921.1	IZUMO3-003	743	233aa	ENSP00000474246.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65020	S4R3E6	NM_001271706.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418122.1	IZUMO3-002	381	127aa	ENSP00000391107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZS5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,229 bps, Translation length: 239 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VZ72

Version

ENST00000543880.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000467652 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.