Transcript: ENST00000374813.1 HLA-DOA-003

Description

major histocompatibility complex, class II, DO alpha [Source:HGNC Symbol;Acc:4936]

Gene Synonyms

HLA-D0-alpha, HLA-DNA, HLA-DZA, HLADZ

Location

Chromosome 6: 32,975,274-32,977,356 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 1027 variant alleles and maps to 1391 oligo probes.

Gene

This transcript is a product of gene ENSG00000204252.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229829.5	HLA-DOA-001	3489	250aa	ENSP00000229829.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4763	P06340	NM_002119.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450833.2	HLA-DOA-201	1307	204aa	ENSP00000403896.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DW77	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374813.1	HLA-DOA-003	303	86aa	ENSP00000363946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6WU08	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000495532.1	HLA-DOA-006	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467465.1	HLA-DOA-002	472	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490305.1	HLA-DOA-005	402	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485901.1	HLA-DOA-004	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 303 bps, Translation length: 86 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000374813.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000076430 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000374813.1 HLA-DOA-003

Summary