Transcript: ENST00000490262.1 SREBF2-004

Description

sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:11290]

Gene Synonyms

BHLHD2, SREBP-2, SREBP2, bHLHd2

Location

Chromosome 22: 42,296,087-42,299,007 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1349 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSG00000198911.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361204.4	SREBF2-001	5240	1141aa	ENSP00000354476.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14023	Q12772 Q8NCY3	NM_004599.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435061.1	SREBF2-005	770	257aa	ENSP00000412287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000424354.1	SREBF2-002	5699	684aa	ENSP00000395728.1	Nonsense mediated decay		G3V0I8 Q05BD5	-	-
ENST00000491541.1	SREBF2-003	4043	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462539.1	SREBF2-008	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463741.1	SREBF2-006	634	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490262.1	SREBF2-004	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464119.1	SREBF2-007	432	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 450 bps,

Version

ENST00000490262.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000321959 (version 1)

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Transcript: ENST00000490262.1 SREBF2-004

Summary