Transcript: ENST00000359626.5 TYW1-001

Description

tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25598]

Gene Synonyms

FLJ10900, MGC23001, MGC60291, RSAFD1, TYW1A, YPL207W

Location

About this transcript

This transcript has 16 exons, is annotated with 20 domains and features, is associated with 102925 variant alleles and maps to 727 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359626.5	TYW1-001	3348	732aa	ENSP00000352645.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5538	B4DW16 Q9NV66	NM_018264.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442959.1	TYW1-010	563	134aa	ENSP00000398897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9Q4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000361660.4	TYW1-002	3255	384aa	ENSP00000354795.4	Nonsense mediated decay		Q9NV66	-	-
ENST00000491969.1	TYW1-009	495	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495971.1	TYW1-007	1302	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475392.1	TYW1-011	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,348 bps, Translation length: 732 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NV66

CCDS

This transcript is a member of the Human CCDS set: CCDS5538

Version

ENST00000359626.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251932 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.