Transcript: ENST00000368719.4 S100A6-009

Description

S100 calcium binding protein A6 [Source:HGNC Symbol;Acc:10496]

Gene Synonyms

2A9, 5B10, CABP, CACY, PRA

Location

Chromosome 1: 153,507,075-153,508,698 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 880 variant alleles and maps to 252 oligo probes.

Gene

This transcript is a product of gene ENSG00000197956.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368720.2	S100A6-008	673	90aa	ENSP00000357709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1040	P06703 R4GN98	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496817.1	S100A6-006	673	90aa	ENSP00000473589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1040	P06703 R4GN98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368719.4	S100A6-009	665	90aa	ENSP00000357708.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1040	P06703 R4GN98	NM_014624.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462776.2	S100A6-010	479	85aa	ENSP00000473547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GN98	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462951.2	S100A6-007	311	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 665 bps, Translation length: 90 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P06703

CCDS

This transcript is a member of the Human CCDS set: CCDS1040

Version

ENST00000368719.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000037722 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000368719.4 S100A6-009

Summary