Transcript: ENST00000575011.1 MYO1C-018

Description

myosin IC [Source:HGNC Symbol;Acc:7597]

Gene Synonyms

MMI-beta, MMIb, NMI, myr2

Location

Chromosome 17: 1,373,534-1,374,402 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 658 variant alleles and maps to 99 oligo probes.

Gene

This transcript is a product of gene ENSG00000197879.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359786.5	MYO1C-001	5145	1063aa	ENSP00000352834.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42226	I3L168 I3L204 I3L3F5 I3L3Y6 I3L4D4 O00159	NM_001080779.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438665.2	MYO1C-010	4898	1044aa	ENSP00000412197.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45562	I3L168 I3L204 I3L3F5 I3L3Y6 I3L4D4 O00159	NM_001080950.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575158.1	MYO1C-002	4804	1028aa	ENSP00000459174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11003	I3L168 I3L204 I3L3F5 I3L3Y6 I3L4D4 O00159	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361007.2	MYO1C-201	4734	1028aa	ENSP00000354283.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11003	I3L168 I3L204 I3L3F5 I3L3Y6 I3L4D4 O00159	NM_033375.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545534.2	MYO1C-003	3676	1039aa	ENSP00000437685.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6E2 I3L168 I3L204 I3L3F5 I3L3Y6 I3L4D4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570984.2	MYO1C-007	901	267aa	ENSP00000459271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L168 I3L204 I3L3F5 I3L3Y6 I3L4D4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000575335.1	MYO1C-006	753	137aa	ENSP00000460415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L168 I3L3F5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000573853.1	MYO1C-009	583	170aa	ENSP00000460831.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L168 I3L3F5 I3L3Y6 I3L4D4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000570490.1	MYO1C-011	565	168aa	ENSP00000461682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L168 I3L3F5 I3L501	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000574790.1	MYO1C-005	555	164aa	ENSP00000461175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L168 I3L3F5 I3L4D4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571715.1	MYO1C-008	541	134aa	ENSP00000458610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L168	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000575011.1	MYO1C-018	385	65aa	ENSP00000459558.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573198.1	MYO1C-013	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571851.2	MYO1C-012	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000576822.1	MYO1C-014	523	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572615.1	MYO1C-019	1035	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575864.1	MYO1C-017	601	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571615.1	MYO1C-016	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574341.1	MYO1C-021	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573961.1	MYO1C-015	443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574308.1	MYO1C-020	403	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 385 bps, Translation length: 65 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000575011.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438921 (version 2)

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Transcript: ENST00000575011.1 MYO1C-018

Summary