Transcript: ENST00000339452.1 DCHS2-002

Description

dachsous cadherin-related 2 [Source:HGNC Symbol;Acc:23111]

Gene Synonyms

CDH27, CDHJ, CDHR7, FLJ20047, PCDH23, PCDHJ

Location

Chromosome 4: 155,243,806-155,412,868 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 78 domains and features, is associated with 73482 variant alleles and maps to 388 oligo probes.

Gene

This transcript is a product of gene ENSG00000197410.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357232.4	DCHS2-001	11040	2916aa	ENSP00000349768.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3785	B3KT73 Q6V1P9	NM_017639.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339452.1	DCHS2-002	5055	1369aa	ENSP00000345062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47150	Q6V1P9	NM_001142552.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443500.1	DCHS2-201	2553	709aa	ENSP00000395539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47151	E9PG03 Q6V1P8	NM_001142553.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456341.2	DCHS2-005	2109	702aa	ENSP00000408543.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6V1P8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507542.1	DCHS2-004	736	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504580.1	DCHS2-003	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 5,055 bps, Translation length: 1,369 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6V1P9

CCDS

This transcript is a member of the Human CCDS set: CCDS47150

Version

ENST00000339452.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000365282 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000339452.1 DCHS2-002

Summary