Transcript: ENST00000578078.1 KRT39-003

Description

keratin 39 [Source:HGNC Symbol;Acc:32971]

Gene Synonyms

CK-39, K39, KA35

Location

About this transcript

This transcript has 8 exons, is annotated with 6 domains and features, is associated with 3818 variant alleles and maps to 357 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355612.2	KRT39-001	1696	491aa	ENSP00000347823.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11382	J3QRE9 Q6A163	NM_213656.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578078.1	KRT39-003	1689	184aa	ENSP00000464180.1	Nonsense mediated decay		J3QRE9	-	-
ENST00000578029.1	KRT39-002	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 1,689 bps, Translation length: 184 residues

Version

ENST00000578078.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000448289 (version 1)