Transcript: ENST00000576351.1 TRPV1-004

Description

transient receptor potential cation channel, subfamily V, member 1 [Source:HGNC Symbol;Acc:12716]

Gene Synonyms

VR1

Location

Chromosome 17: 3,470,107-3,495,677 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 29 domains and features, is associated with 14966 variant alleles and maps to 341 oligo probes.

Gene

This transcript is a product of gene ENSG00000196689.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000571088.1	TRPV1-001	4105	839aa	ENSP00000461007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45576	Q8IZY9 Q8NER1	NM_018727.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000174621.6	TRPV1-201	4170	837aa	ENSP00000174621.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QK85 Q8IZY9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399759.3	TRPV1-002	4092	839aa	ENSP00000382661.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45576	Q8IZY9 Q8NER1	NM_080705.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399756.4	TRPV1-003	4068	839aa	ENSP00000382659.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45576	Q8IZY9 Q8NER1	NM_080706.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425167.2	TRPV1-005	2607	850aa	ENSP00000409627.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EQ78 Q8IZY9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576351.1	TRPV1-004	2525	829aa	ENSP00000459042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L1R6 Q8IZY9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310522.5	TRPV1-006	2340	779aa	ENSP00000311692.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ESJ2 Q8IZY9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574085.1	TRPV1-007	2644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570742.1	TRPV1-008	492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,525 bps, Translation length: 829 residues

Version

ENST00000576351.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438258 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000576351.1 TRPV1-004

Summary