Transcript: ENST00000348261.5 CACNA1H-001

Description

calcium channel, voltage-dependent, T type, alpha 1H subunit [Source:HGNC Symbol;Acc:1395]

Gene Synonyms

CACNA1HB, Cav3.2, ECA6, EIG6

Location

Chromosome 16: 1,203,241-1,271,768 forward strand.

About this transcript

This transcript has 35 exons, is annotated with 64 domains and features, is associated with 54537 variant alleles and maps to 992 oligo probes.

Gene

This transcript is a product of gene ENSG00000196557.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000348261.5	CACNA1H-001	8084	2353aa	ENSP00000334198.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45375	O95180 Q9NYY6 Q9NYY7	NM_021098.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358590.4	CACNA1H-201	8069	2347aa	ENSP00000351401.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45376	O95180 Q9NYY6 Q9NYY7	NM_001005407.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565831.1	CACNA1H-002	7134	2347aa	ENSP00000455840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45376	O95180 Q9NYY6 Q9NYY7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564927.1	CACNA1H-006	3464	897aa	ENSP00000455512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569107.1	CACNA1H-004	3391	1100aa	ENSP00000454990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564231.1	CACNA1H-003	3343	1084aa	ENSP00000457555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000562079.1	CACNA1H-005	3325	1078aa	ENSP00000454581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569953.1	CACNA1H-008	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564954.1	CACNA1H-007	607	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 35, Coding exons: 34, Transcript length: 8,084 bps, Translation length: 2,353 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95180

CCDS

This transcript is a member of the Human CCDS set: CCDS45375

Version

ENST00000348261.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000421601 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000348261.5 CACNA1H-001

Summary