Transcript: ENST00000505447.1 AFAP1-004

Description

actin filament associated protein 1 [Source:HGNC Symbol;Acc:24017]

Gene Synonyms

AFAP, AFAP-110, AFAP110

Location

Chromosome 4: 7,764,949-7,780,914 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 10014 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000196526.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000420658.1	AFAP1-202	7768	814aa	ENSP00000410689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47010	Q8N556	NM_001134647.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358461.2	AFAP1-201	7516	730aa	ENSP00000351245.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3397	Q8N556	NM_198595.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360265.4	AFAP1-001	7479	730aa	ENSP00000353402.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3397	Q8N556	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382543.3	AFAP1-002	2590	814aa	ENSP00000371983.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47010	Q8N556	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513842.1	AFAP1-003	1638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513856.1	AFAP1-005	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508415.1	AFAP1-006	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505447.1	AFAP1-004	1517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,517 bps,

Version

ENST00000505447.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000358895 (version 1)

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Transcript: ENST00000505447.1 AFAP1-004

Summary