Transcript: ENST00000394725.2 SIAH1-002

Description

siah E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:10857]

Gene Synonyms

HUMSIAH, SIAH1A, hSIAH1

Location

Chromosome 16: 48,394,442-48,419,361 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 12159 variant alleles and maps to 333 oligo probes.

Gene

This transcript is a product of gene ENSG00000196470.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356721.3	SIAH1-001	2415	313aa	ENSP00000349156.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32444	H3BU09 Q8IUQ4	NM_001006610.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380006.2	SIAH1-003	3352	282aa	ENSP00000369343.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10735	H3BU09 Q8IUQ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394725.2	SIAH1-002	2147	282aa	ENSP00000378214.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10735	H3BU09 Q8IUQ4	NM_003031.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563745.1	SIAH1-006	589	98aa	ENSP00000457415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BU09	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568007.1	SIAH1-004	2683	282aa	ENSP00000456421.1	Nonsense mediated decay	CCDS10735	H3BU09 Q8IUQ4	-	-
ENST00000573005.1	SIAH1-008	705	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000567973.1	SIAH1-005	673	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565620.1	SIAH1-007	477	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,147 bps, Translation length: 282 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IUQ4

CCDS

This transcript is a member of the Human CCDS set: CCDS10735

Version

ENST00000394725.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256841 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000394725.2 SIAH1-002

Summary