Transcript: ENST00000371621.3 PTPN1-001

Description

protein tyrosine phosphatase, non-receptor type 1 [Source:HGNC Symbol;Acc:9642]

Gene Synonyms

PTP1B

Location

About this transcript

This transcript has 10 exons, is annotated with 19 domains and features, is associated with 30285 variant alleles and maps to 699 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371621.3	PTPN1-001	3529	435aa	ENSP00000360683.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13430	A8K3M3 B4DSN5 P18031	NM_002827.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541713.1	PTPN1-201	1632	362aa	ENSP00000437732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63309	B4DSN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,529 bps, Translation length: 435 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18031

CCDS

This transcript is a member of the Human CCDS set: CCDS13430

Version

ENST00000371621.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000079694 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.