Transcript: ENST00000429261.2 PLA2G2C-001

Description

phospholipase A2, group IIC [Source:HGNC Symbol;Acc:9032]

Location

Chromosome 1: 20,487,746-20,503,917 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 6894 variant alleles and maps to 228 oligo probes.

Gene

This transcript is a product of gene ENSG00000187980.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000429261.2	PLA2G2C-001	3249	149aa	ENSP00000389335.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5R387	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000247992.5	PLA2G2C-201	453	150aa	ENSP00000247992.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KMZ3	NM_001105572.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495760.2	PLA2G2C-002	368	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,249 bps, Translation length: 149 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5R387

Version

ENST00000429261.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs12139100, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, ESP6500:African_American, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-CHD, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-TSI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000007689 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000429261.2 PLA2G2C-001

Summary