Transcript: ENST00000247992.5 PLA2G2C-201

Description

phospholipase A2, group IIC [Source:HGNC Symbol;Acc:9032]

Location

Chromosome 1: 20,490,484-20,501,687 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 14 domains and features, is associated with 4820 variant alleles and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000187980.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000429261.2	PLA2G2C-001	3249	149aa	ENSP00000389335.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5R387	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000247992.5	PLA2G2C-201	453	150aa	ENSP00000247992.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KMZ3	NM_001105572.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495760.2	PLA2G2C-002	368	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 453 bps, Translation length: 150 residues

Version

ENST00000247992.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Stop codons

This transcript has a variant, rs12139100, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-MKK, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-ASW, ESP6500:African_American.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000247992.5 PLA2G2C-201

Summary