Transcript: ENST00000557110.1 FANCM-010

Description

Fanconi anemia, complementation group M [Source:HGNC Symbol;Acc:23168]

Gene Synonyms

FAAP250, KIAA1596

Location

Chromosome 14: 45,665,375-45,669,130 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 1823 variant alleles and maps to 169 oligo probes.

Gene

This transcript is a product of gene ENSG00000187790.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000267430.5	FANCM-001	7111	2048aa	ENSP00000267430.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32070	Q8IYD8	NM_020937.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542564.2	FANCM-003	6167	2022aa	ENSP00000442493.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2RTQ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556250.1	FANCM-004	5577	1564aa	ENSP00000452033.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJS3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554809.1	FANCM-005	3112	1016aa	ENSP00000450632.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556036.1	FANCM-002	2354	669aa	ENSP00000450596.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IYD8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555484.1	FANCM-009	448	106aa	ENSP00000450797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ45	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557110.1	FANCM-010	638	135aa	ENSP00000451846.1	Nonsense mediated decay		H0YJN7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555013.1	FANCM-007	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554030.1	FANCM-006	917	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553551.1	FANCM-008	603	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 638 bps, Translation length: 135 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000557110.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410480 (version 1)

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Transcript: ENST00000557110.1 FANCM-010

Summary