Transcript: ENST00000409262.3 TET3-001

Description

tet methylcytosine dioxygenase 3 [Source:HGNC Symbol;Acc:28313]

Gene Synonyms

AC073046.25, KIAA0401, MGC22014, hCG_40738

Location

About this transcript

This transcript has 9 exons, is annotated with 18 domains and features, is associated with 29479 variant alleles and maps to 574 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409262.3	TET3-001	10983	1660aa	ENSP00000386869.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46339	K9JJH7 O43151	NM_144993.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000305799.7	TET3-004	2280	738aa	ENSP00000307803.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNF3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000475405.2	TET3-005	1608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 10,983 bps, Translation length: 1,660 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43151

CCDS

This transcript is a member of the Human CCDS set: CCDS46339

Version

ENST00000409262.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000328141 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.