Transcript: ENST00000407096.2 TLR5-004

Description

toll-like receptor 5 [Source:HGNC Symbol;Acc:11851]

Gene Synonyms

FLJ10052, MELIOS, MGC126430, MGC126431, SLEB1, TIL3

Location

Chromosome 1: 223,286,310-223,316,580 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 13264 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000187554.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000540964.1	TLR5-202	4088	858aa	ENSP00000440643.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31033	B1AZ06 O60602	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366881.1	TLR5-001	3368	858aa	ENSP00000355846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31033	B1AZ06 O60602	-	-
ENST00000342210.6	TLR5-201	3005	858aa	ENSP00000340089.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31033	B1AZ06 O60602	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407096.2	TLR5-004	459	21aa	ENSP00000385458.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AZ06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484766.1	TLR5-003	487	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465726.1	TLR5-002	435	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 459 bps, Translation length: 21 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000407096.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000092599 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000407096.2 TLR5-004

Summary