Transcript: ENST00000375820.4 COL4A1-001

Description

collagen, type IV, alpha 1 [Source:HGNC Symbol;Acc:2202]

Gene Synonyms

HANAC, ICH, POREN1, arresten

Location

About this transcript

This transcript has 52 exons, is annotated with 64 domains and features, is associated with 74564 variant alleles and maps to 1350 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375820.4	COL4A1-001	6524	1669aa	ENSP00000364979.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9511	A9LSU1 P02462	NM_001845.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543140.1	COL4A1-201	2547	519aa	ENSP00000443348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5K0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467182.1	COL4A1-004	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474391.1	COL4A1-003	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 52, Coding exons: 52, Transcript length: 6,524 bps, Translation length: 1,669 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02462

CCDS

This transcript is a member of the Human CCDS set: CCDS9511

Version

ENST00000375820.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000045759 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.