Transcript: ENST00000396169.2 CCK-002

Description

cholecystokinin [Source:HGNC Symbol;Acc:1569]

Location

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 3649 variant alleles and maps to 297 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396169.2	CCK-002	1527	115aa	ENSP00000379472.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2696	P06307 Q6FG82	NM_000729.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334681.5	CCK-001	830	115aa	ENSP00000335657.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2696	P06307 Q6FG82	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434608.1	CCK-003	747	115aa	ENSP00000409124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2696	P06307 Q6FG82	NM_001174138.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484359.1	CCK-004	718	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 1,527 bps, Translation length: 115 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P06307

CCDS

This transcript is a member of the Human CCDS set: CCDS2696

Version

ENST00000396169.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000343380 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.