Transcript: ENST00000425015.1 ZACN-002

Description

zinc activated ligand-gated ion channel [Source:HGNC Symbol;Acc:29504]

Gene Synonyms

L2, LGICZ, LGICZ1, ZAC, ZAC1

Location

Chromosome 17: 74,075,263-74,078,885 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 2364 variant alleles and maps to 364 oligo probes.

Gene

This transcript is a product of gene ENSG00000186919.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334586.5	ZACN-001	1335	412aa	ENSP00000334854.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11740	Q401N2	NM_180990.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392503.2	ZACN-201	464	126aa	ENSP00000376291.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q401N2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425015.1	ZACN-002	2167	266aa	ENSP00000397489.1	Nonsense mediated decay		Q401N2	-	-
ENST00000421794.1	ZACN-003	1291	126aa	ENSP00000391936.1	Nonsense mediated decay		Q401N2	-	-
ENST00000590045.1	ZACN-007	2651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591500.1	ZACN-006	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524242.1	ZACN-004	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 5, Transcript length: 2,167 bps, Translation length: 266 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q401N2

Version

ENST00000425015.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347828 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000425015.1 ZACN-002

Summary