Transcript: ENST00000334586.5 ZACN-001

Description

zinc activated ligand-gated ion channel [Source:HGNC Symbol;Acc:29504]

Gene Synonyms

L2, LGICZ, LGICZ1, ZAC, ZAC1

Location

Chromosome 17: 74,075,263-74,078,747 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 18 domains and features, is associated with 2301 variant alleles and maps to 312 oligo probes.

Gene

This transcript is a product of gene ENSG00000186919.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334586.5	ZACN-001	1335	412aa	ENSP00000334854.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11740	Q401N2	NM_180990.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392503.2	ZACN-201	464	126aa	ENSP00000376291.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q401N2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425015.1	ZACN-002	2167	266aa	ENSP00000397489.1	Nonsense mediated decay		Q401N2	-	-
ENST00000421794.1	ZACN-003	1291	126aa	ENSP00000391936.1	Nonsense mediated decay		Q401N2	-	-
ENST00000590045.1	ZACN-007	2651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591500.1	ZACN-006	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524242.1	ZACN-004	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,335 bps, Translation length: 412 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q401N2

CCDS

This transcript is a member of the Human CCDS set: CCDS11740

Version

ENST00000334586.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs1043149, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-TSI, ESP6500:European_American, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-JPT.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347827 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000334586.5 ZACN-001

Summary