Transcript: ENST00000554971.1 SHOX-003

Description

short stature homeobox [Source:HGNC Symbol;Acc:10853]

Gene Synonyms

GCFX, PHOG, SHOXY, SS

Location

Chromosome X: 591,542-606,303 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 10293 variant alleles and maps to 397 oligo probes.

Gene

This transcript is a product of gene ENSG00000185960.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381578.1	SHOX-202	3757	292aa	ENSP00000370990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14107	O15266	NM_000451.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334060.3	SHOX-201	1951	225aa	ENSP00000335505.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14106	O15266	NM_006883.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554971.1	SHOX-003	1902	292aa	ENSP00000452016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14107	O15266	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381575.1	SHOX-001	1351	225aa	ENSP00000370987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14106	O15266	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,902 bps, Translation length: 292 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15266

CCDS

This transcript is a member of the Human CCDS set: CCDS14107

Version

ENST00000554971.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411999 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000554971.1 SHOX-003

Summary