Transcript: ENST00000332556.4 LAMP1-001

Description

lysosomal-associated membrane protein 1 [Source:HGNC Symbol;Acc:6499]

Gene Synonyms

CD107a, LAMPA, LGP120

Location

About this transcript

This transcript has 9 exons, is annotated with 17 domains and features, is associated with 14457 variant alleles and maps to 632 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000332556.4	LAMP1-001	2699	417aa	ENSP00000333298.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41909	B3KRY3 P11279	NM_005561.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397181.3	LAMP1-201	1441	364aa	ENSP00000415354.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DWL3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471046.1	LAMP1-002	424	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472564.1	LAMP1-003	5242	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,699 bps, Translation length: 417 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P11279

CCDS

This transcript is a member of the Human CCDS set: CCDS41909

Version

ENST00000332556.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000045876 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.