Transcript: ENST00000426431.2 SP1-002

Description

Sp1 transcription factor [Source:HGNC Symbol;Acc:11205]

Gene Synonyms

TSFP1

Location

About this transcript

This transcript has 6 exons, is annotated with 28 domains and features, is associated with 18895 variant alleles and maps to 652 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000327443.4	SP1-001	2846	785aa	ENSP00000329357.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8857	C4PGM0 G5E9M8 H3BVI2 P08047 Q9NR52	NM_138473.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426431.2	SP1-002	7603	778aa	ENSP00000404263.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44898	C4PGM0 G5E9M8 H3BVI2	NM_003109.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548560.1	SP1-004	1061	230aa	ENSP00000458133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BVI2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551969.1	SP1-003	602	162aa	ENSP00000457804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUU5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 7,603 bps, Translation length: 778 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS44898

Version

ENST00000426431.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000407045 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.