Transcript: ENST00000571916.1 CCDC137-004

Description

coiled-coil domain containing 137 [Source:HGNC Symbol;Acc:33451]

Gene Synonyms

MGC16597

Location

Chromosome 17: 79,634,799-79,639,751 forward strand.

About this transcript

This transcript has 5 exons, is associated with 2728 variant alleles and maps to 172 oligo probes.

Gene

This transcript is a product of gene ENSG00000185298.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329214.8	CCDC137-001	2468	289aa	ENSP00000329360.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42400	H6QX63 Q6PK04	NM_199287.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574107.1	CCDC137-003	890	292aa	ENSP00000458350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0U5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000575223.1	CCDC137-002	1888	289aa	ENSP00000458884.1	Nonsense mediated decay	CCDS42400	H6QX63 Q6PK04	-	-
ENST00000571916.1	CCDC137-004	708	61aa	ENSP00000460261.1	Nonsense mediated decay		I3L385	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574200.1	CCDC137-006	437	44aa	ENSP00000461207.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572531.1	CCDC137-005	265	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 708 bps, Translation length: 61 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000571916.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs10438817, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000440391 (version 1)

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Transcript: ENST00000571916.1 CCDC137-004

Summary