Transcript: ENST00000494400.1 FAF1-002

Description

Fas (TNFRSF6) associated factor 1 [Source:HGNC Symbol;Acc:3578]

Gene Synonyms

CGI-03, HFAF1s, UBXD12, UBXN3A, hFAF1

Location

Chromosome 1: 50,906,948-51,171,723 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 14 domains and features, is associated with 107703 variant alleles and maps to 438 oligo probes.

Gene

This transcript is a product of gene ENSG00000185104.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396153.2	FAF1-001	4367	650aa	ENSP00000379457.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS554	Q9UNN5	NM_007051.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371778.4	FAF1-201	2419	650aa	ENSP00000360843.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS554	Q9UNN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545823.1	FAF1-202	1544	408aa	ENSP00000438870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DEJ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494400.1	FAF1-002	2127	464aa	ENSP00000434929.1	Nonsense mediated decay		B3KT28	-	-
ENST00000472808.1	FAF1-005	759	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487898.1	FAF1-004	681	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,127 bps, Translation length: 464 residues

Version

ENST00000494400.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000021808 (version 3)

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Transcript: ENST00000494400.1 FAF1-002

Summary