Transcript: ENST00000357302.4 CSF1-008

Description

colony stimulating factor 1 (macrophage) [Source:HGNC Symbol;Acc:2432]

Gene Synonyms

CSF-1, M-CSF, MCSF, MGC31930

Location

Chromosome 1: 110,453,227-110,460,047 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 2941 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000184371.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329608.6	CSF1-001	4210	554aa	ENSP00000327513.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS816	E9PKP4 H7BY18 P09603	NM_172211.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344188.5	CSF1-201	2625	438aa	ENSP00000342718.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS817	E9PKP4 H7BY18 P09603	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369802.3	CSF1-002	2484	554aa	ENSP00000358817.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS816	E9PKP4 H7BY18 P09603	NM_172212.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369801.1	CSF1-003	1364	438aa	ENSP00000358816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS817	E9PKP4 H7BY18 P09603	NM_172210.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420111.2	CSF1-004	1083	256aa	ENSP00000407317.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30797	E9PKP4 H7BY18 P09603	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488198.1	CSF1-005	1009	285aa	ENSP00000433837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJA2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000357302.4	CSF1-008	597	119aa	ENSP00000349854.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BY18	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000527192.1	CSF1-006	577	150aa	ENSP00000434527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQ08	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525659.1	CSF1-007	551	113aa	ENSP00000431547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKP4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526001.1	CSF1-009	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 597 bps, Translation length: 119 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000357302.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000390378 (version 1)

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Transcript: ENST00000357302.4 CSF1-008

Summary