Transcript: ENST00000490795.1 PRKD1-004

Description

protein kinase D1 [Source:HGNC Symbol;Acc:9407]

Gene Synonyms

PKC-MU, PKC-mu, PKCM, PKD, PKD1, PRKCM

Location

Chromosome 14: 30,060,321-30,066,874 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 2673 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000184304.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331968.5	PRKD1-001	3726	912aa	ENSP00000333568.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9637	Q15139 Q1KKQ2	NM_002742.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415220.2	PRKD1-002	3189	920aa	ENSP00000390535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WBA3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546371.1	PRKD1-007	585	157aa	ENSP00000447333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YHL5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000549503.1	PRKD1-008	582	117aa	ENSP00000446866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VZ98	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490795.1	PRKD1-004	492	80aa	ENSP00000447723.1	Nonsense mediated decay		H0YHS9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000551644.1	PRKD1-006	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547441.1	PRKD1-005	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468370.1	PRKD1-003	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 492 bps, Translation length: 80 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000490795.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347999 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000490795.1 PRKD1-004

Summary