Transcript: ENST00000562001.1 PGP-003

Description

phosphoglycolate phosphatase [Source:HGNC Symbol;Acc:8909]

Location

About this transcript

This transcript has 2 exons, is annotated with 5 domains and features, is associated with 1040 variant alleles and maps to 225 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333503.7	PGP-001	2727	321aa	ENSP00000330918.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42104	A6NDG6	NM_001042371.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562001.1	PGP-003	905	57aa	ENSP00000457909.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 905 bps, Translation length: 57 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000562001.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000435097 (version 1)