Transcript: ENST00000436070.2 SETD3-002

Description

SET domain containing 3 [Source:HGNC Symbol;Acc:20493]

Gene Synonyms

C14orf154, FLJ23027

Location

Chromosome 14: 99,877,616-99,947,127 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 30085 variant alleles and maps to 433 oligo probes.

Gene

This transcript is a product of gene ENSG00000183576.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331768.5	SETD3-001	2878	594aa	ENSP00000327436.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9951	Q86TU7	NM_032233.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436070.2	SETD3-002	2592	292aa	ENSP00000408602.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NXR6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000329331.3	SETD3-003	1330	296aa	ENSP00000327910.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9952	Q86TU7	NM_199123.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357563.4	SETD3-004	2191	81aa	ENSP00000350174.4	Nonsense mediated decay		C9K0W5	-	-
ENST00000446066.1	SETD3-005	1754	81aa	ENSP00000396870.1	Nonsense mediated decay		C9K0W5	-	-
ENST00000453764.1	SETD3-008	973	81aa	ENSP00000398966.1	Nonsense mediated decay		C9K0W5	-	-
ENST00000453938.1	SETD3-007	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489770.1	SETD3-006	855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 2,592 bps, Translation length: 292 residues

Version

ENST00000436070.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000072337 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000436070.2 SETD3-002

Summary