Transcript: ENST00000380588.4 IGSF5-001

Description

immunoglobulin superfamily, member 5 [Source:HGNC Symbol;Acc:5952]

Gene Synonyms

GSF5, JAM4

Location

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 24590 variant alleles and maps to 344 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380588.4	IGSF5-001	2066	407aa	ENSP00000369962.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33562	Q9NSI5	NM_001080444.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479378.1	IGSF5-002	1062	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459922.1	IGSF5-003	724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,066 bps, Translation length: 407 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NSI5

CCDS

This transcript is a member of the Human CCDS set: CCDS33562

Version

ENST00000380588.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000195005 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.