Transcript: ENST00000474317.1 SPATA13-002

Description

spermatogenesis associated 13 [Source:HGNC Symbol;Acc:23222]

Gene Synonyms

ARHGEF29, ASEF2, FLJ31208

Location

Chromosome 13: 24,798,379-24,823,801 forward strand.

About this transcript

This transcript has 2 exons, is associated with 10765 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSG00000182957.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000424834.2	SPATA13-008	8603	1277aa	ENSP00000398560.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53857	J3KQH2	NM_001286792.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382108.3	SPATA13-202	8457	1277aa	ENSP00000371542.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53857	J3KQH2	NM_001286793.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382095.4	SPATA13-001	6665	652aa	ENSP00000371527.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9305	Q96N96	NM_153023.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399949.2	SPATA13-006	3026	574aa	ENSP00000382830.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66517	Q96N96	NM_001286795.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409126.1	SPATA13-011	2111	512aa	ENSP00000386471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PFR9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343003.6	SPATA13-201	2080	596aa	ENSP00000343631.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66518	Q5VX67 Q96N96	NM_001286794.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434675.1	SPATA13-010	2001	550aa	ENSP00000401605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQJ8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488060.1	SPATA13-004	605	23aa	ENSP00000477304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000454083.1	SPATA13-005	597	146aa	ENSP00000397498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VX67	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494772.1	SPATA13-003	301	23aa	ENSP00000477296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000474317.1	SPATA13-002	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466831.2	SPATA13-007	2191	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 529 bps,

Version

ENST00000474317.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000044181 (version 1)

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Transcript: ENST00000474317.1 SPATA13-002

Summary