Transcript: ENST00000328252.3 PAPPA-001

Description

pregnancy-associated plasma protein A, pappalysin 1 [Source:HGNC Symbol;Acc:8602]

Gene Synonyms

ASBABP2, DIPLA1, IGFBP-4ase, PAPA, PAPP-A, PAPPA1

Location

About this transcript

This transcript has 22 exons, is annotated with 45 domains and features, is associated with 105365 variant alleles and maps to 1192 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328252.3	PAPPA-001	10959	1627aa	ENSP00000330658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6813	F5GZ19 Q13219 Q5QFB7	NM_002581.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534838.1	PAPPA-201	2342	665aa	ENSP00000441461.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZ19 Q5QFB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483254.1	PAPPA-003	790	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460463.1	PAPPA-002	354	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 10,959 bps, Translation length: 1,627 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13219

CCDS

This transcript is a member of the Human CCDS set: CCDS6813

Version

ENST00000328252.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000055546 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.