Transcript: ENST00000330459.3 KPNA2-001

Description

karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395]

Gene Synonyms

IPOA1, QIP2, RCH1, SRP1, SRP1alpha

Location

Chromosome 17: 66,031,635-66,042,958 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 30 domains and features, is associated with 5988 variant alleles and maps to 667 oligo probes.

Gene

This transcript is a product of gene ENSG00000182481.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000537025.2	KPNA2-002	2456	529aa	ENSP00000438483.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32713	J3KS65 J3QLL0 P52292	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000330459.3	KPNA2-001	2181	529aa	ENSP00000332455.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32713	J3KS65 J3QLL0 P52292	NM_002266.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579754.1	KPNA2-003	569	143aa	ENSP00000462331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KS65 J3QLL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584026.1	KPNA2-004	561	134aa	ENSP00000463602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583269.1	KPNA2-005	611	50aa	ENSP00000463320.1	Nonsense mediated decay		J3QL07	-	-
ENST00000582898.1	KPNA2-007	394	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583392.1	KPNA2-006	507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,181 bps, Translation length: 529 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52292

CCDS

This transcript is a member of the Human CCDS set: CCDS32713

Version

ENST00000330459.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000448108 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000330459.3 KPNA2-001

Summary