Transcript: ENST00000314583.3 HCLS1-001

Description

hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:4844]

Gene Synonyms

CTTNL, HS1

Location

Chromosome 3: 121,350,246-121,379,758 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 28 domains and features, is associated with 13603 variant alleles and maps to 540 oligo probes.

Gene

This transcript is a product of gene ENSG00000180353.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000314583.3	HCLS1-001	2000	486aa	ENSP00000320176.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3003	P14317	NM_005335.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428394.2	HCLS1-004	1560	449aa	ENSP00000387645.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVW7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495491.1	HCLS1-002	1219	209aa	ENSP00000418299.1	Nonsense mediated decay		B4DQ69	-	-
ENST00000464274.1	HCLS1-014	552	75aa	ENSP00000420507.1	Nonsense mediated decay		F8WDD5	-	-
ENST00000497391.1	HCLS1-010	533	76aa	ENSP00000419614.1	Nonsense mediated decay		F8WEZ6	-	-
ENST00000473883.1	HCLS1-006	2710	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487290.1	HCLS1-003	1078	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488033.1	HCLS1-009	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468693.1	HCLS1-013	502	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481314.1	HCLS1-011	1069	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491824.1	HCLS1-007	646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479994.1	HCLS1-008	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,000 bps, Translation length: 486 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P14317

CCDS

This transcript is a member of the Human CCDS set: CCDS3003

Version

ENST00000314583.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000355144 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000314583.3 HCLS1-001

Summary