Transcript: ENST00000323372.4 PIPOX-001

Description

pipecolic acid oxidase [Source:HGNC Symbol;Acc:17804]

Gene Synonyms

LPIPOX, PSO

Location

Chromosome 17: 27,369,918-27,384,234 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 14 domains and features, is associated with 5953 variant alleles and maps to 365 oligo probes.

Gene

This transcript is a product of gene ENSG00000179761.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000323372.4	PIPOX-001	2410	390aa	ENSP00000317721.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11248	K7EJU8 K7EK30 Q9P0Z9	NM_016518.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469082.1	PIPOX-002	760	204aa	ENSP00000465329.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJU8 K7EK30	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000466889.1	PIPOX-015	720	153aa	ENSP00000465428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EK30	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583215.1	PIPOX-013	1829	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000580241.1	PIPOX-011	1772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484308.1	PIPOX-014	1038	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000578748.2	PIPOX-010	790	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577182.1	PIPOX-003	633	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000580383.1	PIPOX-012	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000419875.2	PIPOX-006	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,410 bps, Translation length: 390 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P0Z9

CCDS

This transcript is a member of the Human CCDS set: CCDS11248

Version

ENST00000323372.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255954 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000323372.4 PIPOX-001

Summary