Transcript: ENST00000323346.5 SLC17A8-001

Description

solute carrier family 17 (vesicular glutamate transporter), member 8 [Source:HGNC Symbol;Acc:20151]

Gene Synonyms

DFNA25, VGLUT3

Location

About this transcript

This transcript has 12 exons, is annotated with 18 domains and features, is associated with 26593 variant alleles and maps to 447 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000323346.5	SLC17A8-001	3983	589aa	ENSP00000316909.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9077	Q8NDX2	NM_139319.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392989.3	SLC17A8-002	1737	539aa	ENSP00000376715.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44957	Q8NDX2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552697.1	SLC17A8-003	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547922.1	SLC17A8-004	471	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,983 bps, Translation length: 589 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NDX2

CCDS

This transcript is a member of the Human CCDS set: CCDS9077

Version

ENST00000323346.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000408673 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.