Transcript: ENST00000318238.4 SAMD9L-001

Description

sterile alpha motif domain containing 9-like [Source:HGNC Symbol;Acc:1349]

Gene Synonyms

C7orf6, DRIF2, FLJ39885, KIAA2005, UEF, UEF1

Location

Chromosome 7: 92,759,368-92,777,681 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 8406 variant alleles and maps to 678 oligo probes.

Gene

This transcript is a product of gene ENSG00000177409.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318238.4	SAMD9L-001	7134	1584aa	ENSP00000326247.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34681	B4E3M1 Q8IVG5	NM_152703.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411955.1	SAMD9L-007	5831	1584aa	ENSP00000405760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34681	B4E3M1 Q8IVG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437805.1	SAMD9L-005	5757	1584aa	ENSP00000408796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34681	B4E3M1 Q8IVG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446033.1	SAMD9L-006	1198	69aa	ENSP00000410062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IVG5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446959.1	SAMD9L-002	763	69aa	ENSP00000391699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IVG5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000439952.1	SAMD9L-003	631	69aa	ENSP00000391387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IVG5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414791.1	SAMD9L-004	381	69aa	ENSP00000396137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IVG5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477816.1	SAMD9L-008	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 1, Transcript length: 7,134 bps, Translation length: 1,584 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IVG5

CCDS

This transcript is a member of the Human CCDS set: CCDS34681

Version

ENST00000318238.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000341730 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000318238.4 SAMD9L-001

Summary