Transcript: ENST00000424469.2 SLCO3A1-002

Description

solute carrier organic anion transporter family, member 3A1 [Source:HGNC Symbol;Acc:10952]

Gene Synonyms

OATP-D, OATP3A1, OATPD, SLC21A11

Location

Chromosome 15: 92,397,086-92,715,665 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 33 domains and features, is associated with 152508 variant alleles and maps to 379 oligo probes.

Gene

This transcript is a product of gene ENSG00000176463.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318445.6	SLCO3A1-001	5115	710aa	ENSP00000320634.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10371	Q9UIG8	NM_013272.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424469.2	SLCO3A1-002	2705	692aa	ENSP00000387846.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45354	Q9UIG8	NM_001145044.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553304.1	SLCO3A1-007	567	130aa	ENSP00000450559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2B7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000555210.1	SLCO3A1-013	640	109aa	ENSP00000451780.1	Nonsense mediated decay		G3V3K4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555892.1	SLCO3A1-012	524	87aa	ENSP00000451287.1	Nonsense mediated decay		G3V3K4	-	-
ENST00000555549.1	SLCO3A1-005	2092	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555769.1	SLCO3A1-006	1850	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556649.1	SLCO3A1-009	617	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555513.1	SLCO3A1-011	512	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555111.1	SLCO3A1-008	427	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553653.1	SLCO3A1-003	2141	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564072.1	SLCO3A1-014	1972	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566477.1	SLCO3A1-015	1564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,705 bps, Translation length: 692 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UIG8

CCDS

This transcript is a member of the Human CCDS set: CCDS45354

Version

ENST00000424469.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000414816 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000424469.2 SLCO3A1-002

Summary