Transcript: ENST00000524556.1 CSTF3-008

Description

cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa [Source:HGNC Symbol;Acc:2485]

Gene Synonyms

CSTF-77, CstF-77

Location

Chromosome 11: 33,163,154-33,183,041 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 8840 variant alleles and maps to 327 oligo probes.

Gene

This transcript is a product of gene ENSG00000176102.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000323959.4	CSTF3-001	2797	717aa	ENSP00000315791.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7883	E9PJ06 Q12996	NM_001326.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438862.2	CSTF3-002	1132	103aa	ENSP00000388711.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44563	E9PJ06 Q12996	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431742.2	CSTF3-003	715	44aa	ENSP00000393064.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44564	Q12996	NM_001033506.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524827.1	CSTF3-007	693	185aa	ENSP00000431355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLP8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524775.1	CSTF3-004	434	61aa	ENSP00000431903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJ06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528865.1	CSTF3-005	592	91aa	ENSP00000435138.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000524556.1	CSTF3-008	558	52aa	ENSP00000434753.1	Nonsense mediated decay		E9PNK2	-	-
ENST00000526480.1	CSTF3-006	479	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 558 bps, Translation length: 52 residues

Version

ENST00000524556.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388806 (version 1)

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Transcript: ENST00000524556.1 CSTF3-008

Summary