Transcript: ENST00000392993.2 GK5-001

Description

glycerol kinase 5 (putative) [Source:HGNC Symbol;Acc:28635]

Gene Synonyms

MGC40579, RP11-485G4.2

Location

Chromosome 3: 141,882,784-141,944,449 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 12 domains and features, is associated with 24724 variant alleles and maps to 684 oligo probes.

Gene

This transcript is a product of gene ENSG00000175066.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392993.2	GK5-001	3422	529aa	ENSP00000418001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33871	Q6ZS86	NM_001039547.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544571.1	GK5-201	1037	301aa	ENSP00000440860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZS86	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486459.1	GK5-013	545	172aa	ENSP00000420593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5R4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480757.1	GK5-003	4479	301aa	ENSP00000419031.1	Nonsense mediated decay		Q6ZS86	-	-
ENST00000492097.1	GK5-005	3049	301aa	ENSP00000420312.1	Nonsense mediated decay		Q6ZS86	-	-
ENST00000487672.1	GK5-002	1103	153aa	ENSP00000418239.1	Nonsense mediated decay		F8WBF0	-	-
ENST00000463349.1	GK5-011	520	17aa	ENSP00000417153.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466685.3	GK5-007	801	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472759.1	GK5-008	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460515.1	GK5-004	2494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460544.1	GK5-012	744	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460630.1	GK5-010	670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489085.1	GK5-006	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,422 bps, Translation length: 529 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZS86

CCDS

This transcript is a member of the Human CCDS set: CCDS33871

Version

ENST00000392993.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000353999 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000392993.2 GK5-001

Summary