Transcript: ENST00000460902.2 SLC22A1-002

Description

solute carrier family 22 (organic cation transporter), member 1 [Source:HGNC Symbol;Acc:10963]

Gene Synonyms

HOCT1, OCT1, oct1_cds

Location

Chromosome 6: 160,542,968-160,579,748 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 16500 variant alleles and maps to 316 oligo probes.

Gene

This transcript is a product of gene ENSG00000175003.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366963.4	SLC22A1-001	1948	554aa	ENSP00000355930.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5274	F5GY86 O15245	NM_153187.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000324965.4	SLC22A1-006	1521	506aa	ENSP00000318103.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5275	F5GY86 O15245	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457470.2	SLC22A1-007	1452	483aa	ENSP00000409557.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY86 O15245	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540443.1	SLC22A1-005	653	48aa	ENSP00000440105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY86	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539263.1	SLC22A1-004	1598	140aa	ENSP00000443245.1	Nonsense mediated decay		F5H5P3	-	-
ENST00000460902.2	SLC22A1-002	1484	353aa	ENSP00000439274.1	Nonsense mediated decay		F5GY86 O15245	-	-
ENST00000478607.1	SLC22A1-003	324	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,484 bps, Translation length: 353 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15245

Version

ENST00000460902.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000042939 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000460902.2 SLC22A1-002

Summary