Transcript: ENST00000308330.2 LEMD3-001

Description

LEM domain containing 3 [Source:HGNC Symbol;Acc:28887]

Gene Synonyms

MAN1

Location

Chromosome 12: 65,563,351-65,642,107 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 23 domains and features, is associated with 32628 variant alleles and maps to 562 oligo probes.

Gene

This transcript is a product of gene ENSG00000174106.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000308330.2	LEMD3-001	4764	911aa	ENSP00000308369.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8972	B4DI45 Q9Y2U8	NM_014319.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541171.1	LEMD3-002	856	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000539442.1	LEMD3-005	932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542032.1	LEMD3-003	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545026.1	LEMD3-004	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544506.1	LEMD3-006	412	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 4,764 bps, Translation length: 911 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y2U8

CCDS

This transcript is a member of the Human CCDS set: CCDS8972

Version

ENST00000308330.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000401312 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000308330.2 LEMD3-001

Summary