Transcript: ENST00000305815.5 SLC9C1-001

Description

solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 [Source:HGNC Symbol;Acc:31401]

Gene Synonyms

NHE, SLC9A10, sperm-NHE

Location

About this transcript

This transcript has 29 exons, is annotated with 25 domains and features, is associated with 66025 variant alleles and maps to 720 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305815.5	SLC9C1-001	4172	1177aa	ENSP00000306627.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33817	C9J3M6 Q4G0N8	NM_183061.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487372.1	SLC9C1-002	3979	1129aa	ENSP00000420688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J3M6 Q4G0N8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486574.1	SLC9C1-004	521	85aa	ENSP00000417274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J3M6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471295.1	SLC9C1-003	2733	241aa	ENSP00000418371.1	Nonsense mediated decay		C9J3M6 F8WCJ0	-	-
ENST00000467397.1	SLC9C1-005	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 28, Transcript length: 4,172 bps, Translation length: 1,177 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q4G0N8

CCDS

This transcript is a member of the Human CCDS set: CCDS33817

Version

ENST00000305815.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000354066 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.